| 2. Round | 08/08/2006 | Northampton Town | - | Brentford FC | 0:1 |  |
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| 3. Round | 12/08/2006 | Brighton & Hove Albion | - | Brentford FC | 2:2 | |
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| 4. Round | 19/08/2006 | Brentford FC | - | Huddersfield Town | 2:2 | ||||
| 5. Round | 26/08/2006 | Scunthorpe United | - | Brentford FC | 1:1 | ||||
| 6. Round | 02/09/2006 | Brentford FC | - | Bradford City | 2:1 |  |
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| 7. Round | 09/09/2006 | Leyton Orient | - | Brentford FC | 1:1 | ||||
| 8. Round | 12/09/2006 | Brentford FC | - | Swansea City | 0:2 | ||||
| 9. Round | 16/09/2006 | Brentford FC | - | AFC Bournemouth | 0:0 | ||||
| 13. Round | 07/10/2006 | Brentford FC | - | Bristol City | 1:1 | ||||
| 14. Round | 14/10/2006 | Rotherham United | - | Brentford FC | 2:0 | ||||
| 17. Round | 04/11/2006 | Nottingham Forest | - | Brentford FC | 2:0 | ||||
| 18. Round | 18/11/2006 | Brentford FC | - | Crewe Alexandra | 0:4 | |
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| 20. Round | 05/12/2006 | Brentford FC | - | Doncaster Rovers | 0:4 | ||||
| 21. Round | 09/12/2006 | Brentford FC | - | Tranmere Rovers | 1:1 | |
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| 23. Round | 23/12/2006 | Carlisle United | - | Brentford FC | 2:0 | ||||
| 24. Round | 26/12/2006 | Brentford FC | - | Millwall FC | 1:4 |
England