| 23. Round | 26/12/2005 | Lincoln City | - | Boston United | 0:0 | ||||
| 25. Round | 31/12/2005 | Barnet FC | - | Boston United | 1:0 | ||||
| 26. Round | 02/01/2006 | Boston United | - | Leyton Orient | 1:2 | ||||
| 27. Round | 07/01/2006 | Boston United | - | Macclesfield Town | 3:1 | ||||
| 28. Round | 14/01/2006 | Chester City | - | Boston United | 0:1 | ||||
| 24. Round | 18/01/2006 | Boston United | - | Carlisle United | 0:5 | ||||
| 29. Round | 21/01/2006 | Boston United | - | Bury FC | 3:1 | ||||
| 30. Round | 28/01/2006 | Rochdale AFC | - | Boston United | 1:1 | ||||
| 31. Round | 04/02/2006 | Boston United | - | Darlington FC | 0:0 | ||||
| 32. Round | 11/02/2006 | Grimsby Town | - | Boston United | 1:0 | ||||
| 44. Round | 22/04/2006 | Bristol Rovers | - | Boston United | 3:1 | ||||
| 45. Round | 29/04/2006 | Boston United | - | Rushden & Diamonds FC | 2:0 | ||||
| 46. Round | 06/05/2006 | Torquay United | - | Boston United | 0:0 |
Ireland
