| 9. Round | 29/09/2012 | AFC Wimbledon | - | Accrington Stanley | 1:2 | ||||
| 13. Round | 20/10/2012 | Fleetwood Town | - | AFC Wimbledon | 1:1 | ||||
| 14. Round | 23/10/2012 | AFC Wimbledon | - | Bristol Rovers | 3:1 | ||||
| 15. Round | 27/10/2012 | AFC Wimbledon | - | Gillingham FC | 0:1 | ||||
| 16. Round | 06/11/2012 | Exeter City | - | AFC Wimbledon | 2:0 | ||||
| 17. Round | 10/11/2012 | York City | - | AFC Wimbledon | 0:3 | ||||
| 18. Round | 17/11/2012 | AFC Wimbledon | - | Aldershot Town | 1:1 | ||||
| 19. Round | 20/11/2012 | AFC Wimbledon | - | Southend United | 0:4 | ||||
| 20. Round | 24/11/2012 | Morecambe FC | - | AFC Wimbledon | 3:1 | ||||
| 21. Round | 08/12/2012 | Barnet FC | - | AFC Wimbledon | 1:1 | ||||
| 22. Round | 15/12/2012 | AFC Wimbledon | - | Rotherham United | 0:1 | ||||
| 25. Round | 29/12/2012 | AFC Wimbledon | - | Oxford United | 0:3 |  |
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| 26. Round | 01/01/2013 | Torquay United | - | AFC Wimbledon | 2:3 | ||||
| 27. Round | 05/01/2013 | Rochdale AFC | - | AFC Wimbledon | 0:1 | ||||
| 28. Round | 12/01/2013 | AFC Wimbledon | - | Wycombe Wanderers | 2:2 | ||||
| 45. Round | 20/04/2013 | Gillingham FC | - | AFC Wimbledon | 2:2 | |
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| 46. Round | 27/04/2013 | AFC Wimbledon | - | Fleetwood Town | 2:1 |
Kenya