| 31. Round | 03/02/2007 | Yeovil Town | - | Millwall FC | 0:1 | ||||
| 32. Round | 10/02/2007 | Millwall FC | - | Chesterfield FC | 2:1 | ||||
| 33. Round | 17/02/2007 | Oldham Athletic | - | Millwall FC | 1:2 |  |
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| 34. Round | 20/02/2007 | Millwall FC | - | Leyton Orient | 2:5 | ||||
| 35. Round | 24/02/2007 | Blackpool FC | - | Millwall FC | 0:1 |  |
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| 36. Round | 03/03/2007 | Millwall FC | - | Cheltenham Town | 2:0 | ||||
| 37. Round | 10/03/2007 | Millwall FC | - | Carlisle United | 2:0 | ||||
| 27. Round | 13/03/2007 | Millwall FC | - | Crewe Alexandra | 2:2 | ||||
| 38. Round | 17/03/2007 | AFC Bournemouth | - | Millwall FC | 1:0 | ||||
| 39. Round | 24/03/2007 | Port Vale FC | - | Millwall FC | 2:0 | |
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| 40. Round | 31/03/2007 | Millwall FC | - | Swansea City | 2:0 | |
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| 41. Round | 07/04/2007 | Millwall FC | - | Nottingham Forest | 1:0 | ||||
| 42. Round | 09/04/2007 | Doncaster Rovers | - | Millwall FC | 1:2 | ||||
| 43. Round | 14/04/2007 | Millwall FC | - | Tranmere Rovers | 2:2 | ||||
| 44. Round | 21/04/2007 | Huddersfield Town | - | Millwall FC | 4:2 | ||||
| 45. Round | 28/04/2007 | Millwall FC | - | Bristol City | 1:0 | ||||
| 46. Round | 05/05/2007 | Bradford City | - | Millwall FC | 2:2 |
England