| 10. Round | 29/09/2009 | Oldham Athletic | - | Milton Keynes Dons | 2:1 | ||||
| 11. Round | 03/10/2009 | Brighton & Hove Albion | - | Milton Keynes Dons | 0:1 | ||||
| 21. Round | 12/12/2009 | Leyton Orient | - | Milton Keynes Dons | 1:2 |  |
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| 30. Round | 06/02/2010 | Stockport County | - | Milton Keynes Dons | 1:3 | ||||
| 31. Round | 13/02/2010 | Carlisle United | - | Milton Keynes Dons | 5:0 | ||||
| 33. Round | 23/02/2010 | Milton Keynes Dons | - | Millwall FC | 1:3 | ||||
| 34. Round | 27/02/2010 | Yeovil Town | - | Milton Keynes Dons | 1:0 | ||||
| 35. Round | 06/03/2010 | Milton Keynes Dons | - | Leyton Orient | 1:0 | ||||
| 36. Round | 13/03/2010 | Brentford FC | - | Milton Keynes Dons | 3:3 |
England