1. Round | 06/08/2016 | Hartlepool United | - | Colchester United | 1:1 | ||||
6. Round | 03/09/2016 | Colchester United | - | Exeter City | 2:3 | ||||
10. Round | 27/09/2016 | Crawley Town | - | Colchester United | 1:1 | ||||
11. Round | 01/10/2016 | Carlisle United | - | Colchester United | 2:0 | ||||
12. Round | 08/10/2016 | Colchester United | - | Newport County | 0:0 | ||||
13. Round | 15/10/2016 | Doncaster Rovers | - | Colchester United | 1:0 | ||||
17. Round | 19/11/2016 | Yeovil Town | - | Colchester United | 2:1 |