| 6. Round | 15/09/2012 | Sheffield United | - | Bury FC | 1:1 |  |
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| 7. Round | 18/09/2012 | Tranmere Rovers | - | Bury FC | 3:0 | |
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| 8. Round | 22/09/2012 | Bury FC | - | Milton Keynes Dons | 1:4 | ||||
| 14. Round | 23/10/2012 | Bury FC | - | Hartlepool United | 2:1 | ||||
| 15. Round | 27/10/2012 | Bury FC | - | Walsall FC | 1:1 | ||||
| 19. Round | 20/11/2012 | Scunthorpe United | - | Bury FC | 1:2 | ||||
| 21. Round | 08/12/2012 | Bury FC | - | Leyton Orient | 0:2 | ||||
| 22. Round | 15/12/2012 | Crewe Alexandra | - | Bury FC | 1:0 | |
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| 23. Round | 21/12/2012 | Bury FC | - | Shrewsbury Town | 2:2 | ||||
| 24. Round | 26/12/2012 | Preston North End | - | Bury FC | 0:0 | |
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| 25. Round | 29/12/2012 | Carlisle United | - | Bury FC | 2:1 | |
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| 28. Round | 12/01/2013 | Milton Keynes Dons | - | Bury FC | 1:1 | ||||
| 29. Round | 19/03/2013 | Bury FC | - | Stevenage FC | 2:0 | ||||
| 40. Round | 23/03/2013 | AFC Bournemouth | - | Bury FC | 4:1 | ||||
| 41. Round | 29/03/2013 | Bury FC | - | Crewe Alexandra | 2:2 | |
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| 42. Round | 01/04/2013 | Leyton Orient | - | Bury FC | 2:0 | ||||
| 43. Round | 06/04/2013 | Hartlepool United | - | Bury FC | 2:0 | |
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| 45. Round | 20/04/2013 | Walsall FC | - | Bury FC | 1:1 |  |
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| 46. Round | 27/04/2013 | Bury FC | - | Yeovil Town | 3:2 |
Nigeria