| 25. Round | 01/09/1898 | Everton FC | - | Blackburn Rovers | 2:1 | ||||
| 1. Round | 03/09/1898 | Sheffield United | - | Everton FC | 1:1 | ||||
| 2. Round | 10/09/1898 | Everton FC | - | Newcastle United | 3:0 | ||||
| 3. Round | 17/09/1898 | Preston North End | - | Everton FC | 0:0 | ||||
| 4. Round | 24/09/1898 | Everton FC | - | Liverpool FC | 1:2 | ||||
| 9. Round | 29/10/1898 | Blackburn Rovers | - | Everton FC | 1:3 | ||||
| 10. Round | 05/11/1898 | Everton FC | - | The Wednesday FC | 2:0 | ||||
| 11. Round | 12/11/1898 | Sunderland AFC | - | Everton FC | 2:1 | ||||
| 12. Round | 19/11/1898 | Everton FC | - | Wolverhampton Wanderers | 2:1 | ||||
| 13. Round | 26/11/1898 | Everton FC | - | Bury FC | 0:1 | ||||
| 14. Round | 03/12/1898 | Notts County | - | Everton FC | 0:1 | ||||
| 15. Round | 10/12/1898 | Everton FC | - | Stoke City | 2:0 | ||||
| 16. Round | 17/12/1898 | Aston Villa | - | Everton FC | 3:0 | ||||
| 32. Round | 08/04/1899 | Stoke City | - | Everton FC | 2:1 | ||||
| 33. Round | 15/04/1899 | Everton FC | - | Aston Villa | 1:1 | ||||
| 34. Round | 22/04/1899 | Burnley FC | - | Everton FC | 0:0 | ||||
| 28. Round | 29/04/1899 | Wolverhampton Wanderers | - | Everton FC | 1:2 |
England