| 28. Round | 25/01/2014 | Dagenham & Redbridge | - | Scunthorpe United | 3:3 | ||||
| 29. Round | 27/01/2014 | Scunthorpe United | - | Fleetwood Town | 0:0 | ||||
| 30. Round | 01/02/2014 | Hartlepool United | - | Scunthorpe United | 0:0 | ||||
| 31. Round | 08/02/2014 | Scunthorpe United | - | Chesterfield FC | 1:1 | ||||
| 32. Round | 14/02/2014 | Accrington Stanley | - | Scunthorpe United | 2:3 | ||||
| 33. Round | 22/02/2014 | Scunthorpe United | - | Portsmouth FC | 5:1 | ||||
| 25. Round | 25/02/2014 | Scunthorpe United | - | Bristol Rovers | 1:1 | ||||
| 36. Round | 11/03/2014 | Scunthorpe United | - | Southend United | 2:2 | ||||
| 37. Round | 15/03/2014 | Plymouth Argyle | - | Scunthorpe United | 0:2 | ||||
| 38. Round | 22/03/2014 | Scunthorpe United | - | Burton Albion | 1:0 | ||||
| 39. Round | 25/03/2014 | Cheltenham Town | - | Scunthorpe United | 0:2 |  |
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| 40. Round | 29/03/2014 | Scunthorpe United | - | Wycombe Wanderers | 0:0 | ||||
| 46. Round | 03/05/2014 | Scunthorpe United | - | York City | 2:2 |
England