| 17. Round | 12/11/2016 | Millwall FC | - | Bristol Rovers | 4:0 |  |
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| 18. Round | 19/11/2016 | Bolton Wanderers | - | Millwall FC | 2:0 | ||||
| 19. Round | 22/11/2016 | Millwall FC | - | AFC Wimbledon | 0:0 | ||||
| 20. Round | 26/11/2016 | Bury FC | - | Millwall FC | 2:3 |  |
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| 21. Round | 10/12/2016 | Millwall FC | - | Shrewsbury Town | 0:1 | |
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| 32. Round | 14/02/2017 | Millwall FC | - | Port Vale FC | 2:0 | ||||
| 29. Round | 21/02/2017 | Millwall FC | - | Chesterfield FC | 0:0 | ||||
| 34. Round | 25/02/2017 | Oldham Athletic | - | Millwall FC | 0:0 | ||||
| 35. Round | 28/02/2017 | Millwall FC | - | Peterborough United | 1:0 |
England