| 26. Round | 14/01/2012 | Northampton Town | - | Southend United | 2:5 | ||||
| 28. Round | 31/01/2012 | Southend United | - | Swindon Town | 1:4 | ||||
| 30. Round | 10/02/2012 | Southend United | - | Rotherham United | 0:2 | ||||
| 31. Round | 13/02/2012 | Gillingham FC | - | Southend United | 1:2 | ||||
| 33. Round | 25/02/2012 | Morecambe FC | - | Southend United | 1:0 | ||||
| 34. Round | 03/03/2012 | Burton Albion | - | Southend United | 0:2 | ||||
| 35. Round | 05/03/2012 | Southend United | - | Crawley Town | 0:0 | ||||
| 36. Round | 10/03/2012 | Southend United | - | Accrington Stanley | 2:2 | ||||
| 38. Round | 20/03/2012 | Southend United | - | Aldershot Town | 0:1 |
England