| 1. Round | 05/11/2016 | Bury FC | - | AFC Wimbledon | 2:2 | ||||
| 1. Round | 15/11/2016 | AFC Wimbledon | - | Bury FC | 5:0 | ||||
| 2. Round | 04/12/2016 | Curzon Ashton | - | AFC Wimbledon | 3:4 | ||||
| 3. Round | 07/01/2017 | Sutton United | - | AFC Wimbledon | 0:0 |  |
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| 3. Round | 17/01/2017 | AFC Wimbledon | - | Sutton United | 1:3 |
England