| 3. Round | 12/08/2006 | Walsall FC | - | Hartlepool United | 2:0 | ||||
| 5. Round | 26/08/2006 | Hereford United | - | Hartlepool United | 3:1 | ||||
| 6. Round | 01/09/2006 | Hartlepool United | - | Boston United | 2:1 |  |
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| 10. Round | 23/09/2006 | Peterborough United | - | Hartlepool United | 3:5 | ||||
| 11. Round | 26/09/2006 | Grimsby Town | - | Hartlepool United | 1:4 | ||||
| 12. Round | 30/09/2006 | Hartlepool United | - | Wrexham FC | 3:0 | ||||
| 13. Round | 06/10/2006 | Lincoln City | - | Hartlepool United | 2:0 | ||||
| 15. Round | 20/10/2006 | Chester City | - | Hartlepool United | 2:1 |
England