| 16. Round | 28/10/2006 | Tranmere Rovers | - | AFC Bournemouth | 1:0 | ||||
| 17. Round | 03/11/2006 | Tranmere Rovers | - | Millwall FC | 3:1 | ||||
| 18. Round | 18/11/2006 | Brighton & Hove Albion | - | Tranmere Rovers | 0:1 | ||||
| 19. Round | 24/11/2006 | Tranmere Rovers | - | Blackpool FC | 2:0 | ||||
| 20. Round | 05/12/2006 | Scunthorpe United | - | Tranmere Rovers | 1:1 | ||||
| 31. Round | 03/02/2007 | Oldham Athletic | - | Tranmere Rovers | 1:0 | ||||
| 32. Round | 10/02/2007 | Tranmere Rovers | - | Doncaster Rovers | 1:0 | ||||
| 42. Round | 09/04/2007 | Tranmere Rovers | - | Brighton & Hove Albion | 2:1 | ||||
| 43. Round | 14/04/2007 | Millwall FC | - | Tranmere Rovers | 2:2 | ||||
| 44. Round | 21/04/2007 | Tranmere Rovers | - | Scunthorpe United | 0:2 | ||||
| 45. Round | 28/04/2007 | Crewe Alexandra | - | Tranmere Rovers | 1:1 | ||||
| 46. Round | 05/05/2007 | Tranmere Rovers | - | Brentford FC | 3:1 |
Ireland
England