| 2. Round | 10/09/1898 | Stoke City | - | Burnley FC | 4:1 |  |
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| 9. Round | 29/10/1898 | Derby County | - | Stoke City | 1:1 | ||||
| 10. Round | 05/11/1898 | Stoke City | - | West Bromwich Albion | 2:1 | ||||
| 11. Round | 12/11/1898 | Blackburn Rovers | - | Stoke City | 4:1 | ||||
| 19. Round | 14/11/1898 | Stoke City | - | Preston North End | 2:1 | |
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| 12. Round | 19/11/1898 | Stoke City | - | The Wednesday FC | 1:0 | |
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| 13. Round | 26/11/1898 | Sunderland AFC | - | Stoke City | 2:0 | ||||
| 14. Round | 03/12/1898 | Stoke City | - | Wolverhampton Wanderers | 2:4 | |
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| 17. Round | 24/12/1898 | Bury FC | - | Stoke City | 5:2 | |
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| 31. Round | 26/12/1898 | Stoke City | - | Nottingham Forest | 2:1 | ||||
| 21. Round | 14/01/1899 | Stoke City | - | Sheffield United | 4:1 | |
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| 23. Round | 04/02/1899 | Liverpool FC | - | Stoke City | 1:0 | ||||
| 29. Round | 25/03/1899 | Stoke City | - | Sunderland AFC | 1:0 | ||||
| 30. Round | 01/04/1899 | Wolverhampton Wanderers | - | Stoke City | 3:2 | |
England