| 6. Round | 06/09/2003 | Boston United | - | Scunthorpe United | 1:1 |  |
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| 8. Round | 16/09/2003 | Kidderminster Harriers | - | Scunthorpe United | 0:2 | ||||
| 9. Round | 20/09/2003 | Leyton Orient | - | Scunthorpe United | 1:1 | ||||
| 12. Round | 04/10/2003 | Rochdale AFC | - | Scunthorpe United | 2:0 | ||||
| 14. Round | 17/10/2003 | Northampton Town | - | Scunthorpe United | 1:1 | ||||
| 22. Round | 20/12/2003 | Yeovil Town | - | Scunthorpe United | 2:1 | ||||
| 23. Round | 26/12/2003 | Doncaster Rovers | - | Scunthorpe United | 1:0 | ||||
| 24. Round | 28/12/2003 | Scunthorpe United | - | Boston United | 0:1 | ||||
| 26. Round | 10/01/2004 | Bristol Rovers | - | Scunthorpe United | 1:0 | ||||
| 40. Round | 02/04/2004 | Southend United | - | Scunthorpe United | 4:2 | ||||
| 41. Round | 10/04/2004 | Scunthorpe United | - | Rochdale AFC | 2:2 | |
England