| 6. Round | 15/09/2012 | Fleetwood Town | - | Northampton Town | 1:0 | ||||
| 11. Round | 06/10/2012 | Bristol Rovers | - | Northampton Town | 3:1 | ||||
| 13. Round | 19/10/2012 | Barnet FC | - | Northampton Town | 4:0 | ||||
| 15. Round | 27/10/2012 | Northampton Town | - | Port Vale FC | 2:0 | ||||
| 17. Round | 10/11/2012 | Accrington Stanley | - | Northampton Town | 2:4 |
England