| 1. Round | 05/08/2006 | Southend United | - | Stoke City | 1:0 | ||||
| 2. Round | 08/08/2006 | Crystal Palace | - | Southend United | 3:1 | ||||
| 3. Round | 12/08/2006 | Queens Park Rangers | - | Southend United | 2:0 |  |
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| 4. Round | 19/08/2006 | Southend United | - | Sunderland AFC | 3:1 | ||||
| 5. Round | 26/08/2006 | Leicester City | - | Southend United | 1:0 | ||||
| 6. Round | 09/09/2006 | Southend United | - | Sheffield Wednesday | 0:0 | ||||
| 7. Round | 12/09/2006 | Southend United | - | Norwich City | 3:3 | ||||
| 8. Round | 16/09/2006 | West Bromwich Albion | - | Southend United | 1:1 | ||||
| 9. Round | 24/09/2006 | Southend United | - | Cardiff City | 0:3 | ||||
| 10. Round | 30/09/2006 | Derby County | - | Southend United | 3:0 | ||||
| 11. Round | 13/10/2006 | Southend United | - | Coventry City | 2:3 | |
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| 12. Round | 17/10/2006 | Burnley FC | - | Southend United | 0:0 | ||||
| 13. Round | 21/10/2006 | Southend United | - | Ipswich Town | 1:3 | ||||
| 14. Round | 28/10/2006 | Leeds United | - | Southend United | 2:0 | ||||
| 15. Round | 31/10/2006 | Southend United | - | Hull City | 2:3 | ||||
| 17. Round | 11/11/2006 | Southend United | - | Preston North End | 0:0 | ||||
| 28. Round | 13/01/2007 | Cardiff City | - | Southend United | 0:1 |
England