1. Round | 06/08/2016 | Southend United | - | Gillingham FC | 1:3 | ||||
3. Round | 16/08/2016 | Sheffield United | - | Southend United | 0:3 | ||||
4. Round | 20/08/2016 | Southend United | - | Bristol Rovers | 1:1 | ||||
5. Round | 27/08/2016 | Southend United | - | Fleetwood Town | 0:2 | ||||
8. Round | 17/09/2016 | Southend United | - | Millwall FC | 3:1 | ||||
10. Round | 27/09/2016 | Southend United | - | Oxford United | 2:1 | ||||
11. Round | 01/10/2016 | Southend United | - | Peterborough United | 1:1 | ||||
12. Round | 08/10/2016 | Rochdale AFC | - | Southend United | 3:0 | ||||
16. Round | 29/10/2016 | Southend United | - | Shrewsbury Town | 1:1 | ||||
17. Round | 12/11/2016 | Bury FC | - | Southend United | 1:4 | ||||
18. Round | 19/11/2016 | Southend United | - | Bradford City | 3:0 | ||||
21. Round | 10/12/2016 | Southend United | - | Coventry City | 3:1 | ||||
29. Round | 28/01/2017 | Fleetwood Town | - | Southend United | 1:1 | ||||
32. Round | 14/02/2017 | Oxford United | - | Southend United | 0:2 | ||||
26. Round | 21/02/2017 | Peterborough United | - | Southend United | 1:4 | ||||
42. Round | 08/04/2017 | Charlton Athletic | - | Southend United | 2:1 | ||||
46. Round | 30/04/2017 | Southend United | - | Bury FC | 1:0 |