| 7. Round | 13/09/2013 | Southend United | - | Scunthorpe United | 0:1 | ||||
| 13. Round | 22/10/2013 | Fleetwood Town | - | Scunthorpe United | 0:1 | ||||
| 14. Round | 26/10/2013 | Scunthorpe United | - | Hartlepool United | 1:0 | ||||
| 15. Round | 02/11/2013 | Chesterfield FC | - | Scunthorpe United | 1:1 |  |
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| 16. Round | 16/11/2013 | Scunthorpe United | - | Accrington Stanley | 0:2 | ||||
| 17. Round | 23/11/2013 | Portsmouth FC | - | Scunthorpe United | 1:2 | ||||
| 34. Round | 01/03/2014 | Newport County | - | Scunthorpe United | 2:2 | ||||
| 37. Round | 15/03/2014 | Plymouth Argyle | - | Scunthorpe United | 0:2 | ||||
| 43. Round | 18/04/2014 | Morecambe FC | - | Scunthorpe United | 1:1 |
England