| 3. Round | 12/08/2006 | Chesterfield FC | - | Millwall FC | 5:1 | ||||
| 13. Round | 07/10/2006 | Carlisle United | - | Millwall FC | 1:2 | ||||
| 14. Round | 14/10/2006 | Millwall FC | - | AFC Bournemouth | 1:0 | ||||
| 15. Round | 22/10/2006 | Swansea City | - | Millwall FC | 2:0 | ||||
| 16. Round | 28/10/2006 | Millwall FC | - | Port Vale FC | 1:1 | ||||
| 19. Round | 25/11/2006 | Nottingham Forest | - | Millwall FC | 3:1 | ||||
| 20. Round | 05/12/2006 | Millwall FC | - | Huddersfield Town | 0:0 | ||||
| 22. Round | 16/12/2006 | Bristol City | - | Millwall FC | 1:0 | ||||
| 31. Round | 03/02/2007 | Yeovil Town | - | Millwall FC | 0:1 | ||||
| 32. Round | 10/02/2007 | Millwall FC | - | Chesterfield FC | 2:1 | ||||
| 33. Round | 17/02/2007 | Oldham Athletic | - | Millwall FC | 1:2 | ||||
| 34. Round | 20/02/2007 | Millwall FC | - | Leyton Orient | 2:5 |
England