| 4. Round | 19/08/2023 | Colchester United | - | Milton Keynes Dons | 2:3 |  |
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| 5. Round | 26/08/2023 | Milton Keynes Dons | - | Doncaster Rovers | 2:1 | ||||
| 11. Round | 03/10/2023 | Walsall FC | - | Milton Keynes Dons | 0:0 | ||||
| 12. Round | 07/10/2023 | Gillingham FC | - | Milton Keynes Dons | 2:1 | ||||
| 14. Round | 21/10/2023 | Accrington Stanley | - | Milton Keynes Dons | 1:0 | ||||
| 22. Round | 16/12/2023 | Milton Keynes Dons | - | Forest Green Rovers | 2:0 | ||||
| 33. Round | 13/02/2024 | Bradford City | - | Milton Keynes Dons | 4:0 | ||||
| 34. Round | 17/02/2024 | Swindon Town | - | Milton Keynes Dons | 1:2 | ||||
| 27. Round | 20/02/2024 | Milton Keynes Dons | - | Wrexham AFC | 1:1 | ||||
| 35. Round | 24/02/2024 | Milton Keynes Dons | - | Newport County | 3:0 | ||||
| 21. Round | 05/03/2024 | Mansfield Town | - | Milton Keynes Dons | 1:2 | |
 |
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| 37. Round | 09/03/2024 | Milton Keynes Dons | - | Salford City | 3:1 | ||||
| 38. Round | 12/03/2024 | Grimsby Town | - | Milton Keynes Dons | 1:0 | ||||
| 39. Round | 16/03/2024 | Milton Keynes Dons | - | Crewe Alexandra | 3:1 | |
England