| 27. Round | 06/01/2007 | AFC Bournemouth | - | Brentford FC | 1:0 |  |
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| 28. Round | 13/01/2007 | Brentford FC | - | Leyton Orient | 2:2 | |
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| 29. Round | 20/01/2007 | Yeovil Town | - | Brentford FC | 1:0 | |
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| 30. Round | 27/01/2007 | Brentford FC | - | Carlisle United | 0:0 | |
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| 32. Round | 10/02/2007 | Brentford FC | - | Brighton & Hove Albion | 1:0 | ||||
| 33. Round | 17/02/2007 | Huddersfield Town | - | Brentford FC | 0:2 | ||||
| 35. Round | 24/02/2007 | Bradford City | - | Brentford FC | 1:1 | |
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| 36. Round | 03/03/2007 | Brentford FC | - | Scunthorpe United | 0:2 | |
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| 37. Round | 10/03/2007 | Bristol City | - | Brentford FC | 1:0 | ||||
| 38. Round | 17/03/2007 | Brentford FC | - | Rotherham United | 0:1 | |
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| 39. Round | 25/03/2007 | Brentford FC | - | Oldham Athletic | 2:2 | ||||
| 40. Round | 31/03/2007 | Gillingham FC | - | Brentford FC | 2:1 | ||||
| 41. Round | 07/04/2007 | Brentford FC | - | Cheltenham Town | 0:2 | ||||
| 42. Round | 09/04/2007 | Crewe Alexandra | - | Brentford FC | 3:1 | |
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| 43. Round | 14/04/2007 | Brentford FC | - | Nottingham Forest | 2:4 | |
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| 44. Round | 21/04/2007 | Doncaster Rovers | - | Brentford FC | 3:0 | |
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| 46. Round | 05/05/2007 | Tranmere Rovers | - | Brentford FC | 3:1 |
England