| 20. Round | 24/11/2012 | Milton Keynes Dons | - | Colchester United | 5:1 | ||||
| 24. Round | 26/12/2012 | Milton Keynes Dons | - | Walsall FC | 2:4 | ||||
| 37. Round | 09/03/2013 | Sheffield United | - | Milton Keynes Dons | 0:0 |  |
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| 38. Round | 12/03/2013 | Milton Keynes Dons | - | Shrewsbury Town | 2:3 | ||||
| 39. Round | 16/03/2013 | Milton Keynes Dons | - | Tranmere Rovers | 3:0 | ||||
| 29. Round | 19/03/2013 | Crewe Alexandra | - | Milton Keynes Dons | 2:1 |  |
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| 41. Round | 29/03/2013 | Hartlepool United | - | Milton Keynes Dons | 0:2 | |
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| 42. Round | 01/04/2013 | Milton Keynes Dons | - | Brentford FC | 2:0 | ||||
| 43. Round | 06/04/2013 | Milton Keynes Dons | - | Crawley Town | 0:0 | ||||
| 33. Round | 09/04/2013 | Milton Keynes Dons | - | Swindon Town | 2:0 | ||||
| 44. Round | 13/04/2013 | Leyton Orient | - | Milton Keynes Dons | 2:0 | ||||
| 40. Round | 16/04/2013 | Colchester United | - | Milton Keynes Dons | 0:2 | |
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| 45. Round | 20/04/2013 | Milton Keynes Dons | - | Scunthorpe United | 0:1 | ||||
| 46. Round | 27/04/2013 | Stevenage FC | - | Milton Keynes Dons | 0:2 | |
England
Ireland 
