| 9. Round | 28/09/2013 | Northampton Town | - | Morecambe FC | 0:0 | ||||
| 10. Round | 05/10/2013 | AFC Wimbledon | - | Northampton Town | 0:2 |  |
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| 11. Round | 12/10/2013 | Oxford United | - | Northampton Town | 2:0 | ||||
| 12. Round | 19/10/2013 | Northampton Town | - | Dagenham & Redbridge | 2:2 | |
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| 13. Round | 22/10/2013 | Rochdale AFC | - | Northampton Town | 3:2 | ||||
| 14. Round | 26/10/2013 | Northampton Town | - | Cheltenham Town | 1:1 | ||||
| 15. Round | 02/11/2013 | Plymouth Argyle | - | Northampton Town | 1:0 | ||||
| 16. Round | 16/11/2013 | Northampton Town | - | Fleetwood Town | 1:0 | ||||
| 17. Round | 23/11/2013 | Hartlepool United | - | Northampton Town | 2:0 | |
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| 18. Round | 26/11/2013 | Chesterfield FC | - | Northampton Town | 0:0 | ||||
| 19. Round | 30/11/2013 | Northampton Town | - | Accrington Stanley | 1:0 | ||||
| 20. Round | 14/12/2013 | Bury FC | - | Northampton Town | 1:1 | ||||
| 21. Round | 21/12/2013 | Northampton Town | - | Wycombe Wanderers | 1:4 | |
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| 22. Round | 26/12/2013 | Burton Albion | - | Northampton Town | 1:0 | ||||
| 23. Round | 29/12/2013 | Portsmouth FC | - | Northampton Town | 0:0 | ||||
| 25. Round | 04/01/2014 | Newport County | - | Northampton Town | 1:2 | |
England