| 1. Round | 05/08/2006 | Barnet FC | - | Torquay United | 0:1 | ||||
| 2. Round | 08/08/2006 | Swindon Town | - | Barnet FC | 2:1 | ||||
| 3. Round | 12/08/2006 | Accrington Stanley | - | Barnet FC | 2:1 | ||||
| 5. Round | 26/08/2006 | Wrexham FC | - | Barnet FC | 1:1 |  |
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| 13. Round | 07/10/2006 | Stockport County | - | Barnet FC | 2:0 | |
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| 14. Round | 14/10/2006 | Barnet FC | - | Lincoln City | 0:5 | ||||
| 16. Round | 28/10/2006 | Barnet FC | - | Chester City | 1:0 | ||||
| 17. Round | 04/11/2006 | Hartlepool United | - | Barnet FC | 0:1 | ||||
| 18. Round | 18/11/2006 | Barnet FC | - | Rochdale AFC | 3:2 | ||||
| 20. Round | 05/12/2006 | Barnet FC | - | Grimsby Town | 0:1 | ||||
| 21. Round | 09/12/2006 | Wycombe Wanderers | - | Barnet FC | 1:1 | ||||
| 22. Round | 16/12/2006 | Barnet FC | - | Mansfield Town | 2:1 | ||||
| 23. Round | 22/12/2006 | Shrewsbury Town | - | Barnet FC | 0:1 | ||||
| 31. Round | 03/02/2007 | Torquay United | - | Barnet FC | 1:1 | ||||
| 33. Round | 17/02/2007 | Hereford United | - | Barnet FC | 2:0 | ||||
| 40. Round | 31/03/2007 | Barnet FC | - | Darlington FC | 2:1 | ||||
| 41. Round | 07/04/2007 | Barnet FC | - | Hartlepool United | 2:1 | ||||
| 44. Round | 21/04/2007 | Grimsby Town | - | Barnet FC | 5:0 | ||||
| 45. Round | 28/04/2007 | Mansfield Town | - | Barnet FC | 2:1 | |
England