| 29. Round | 20/01/2007 | Notts County | - | Torquay United | 5:2 |  |
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| 30. Round | 26/01/2007 | Torquay United | - | Grimsby Town | 4:1 | ||||
| 27. Round | 30/01/2007 | Mansfield Town | - | Torquay United | 5:0 | ||||
| 31. Round | 03/02/2007 | Torquay United | - | Barnet FC | 1:1 | ||||
| 32. Round | 10/02/2007 | Lincoln City | - | Torquay United | 1:0 | ||||
| 33. Round | 17/02/2007 | Torquay United | - | Hartlepool United | 0:1 | ||||
| 36. Round | 02/03/2007 | Chester City | - | Torquay United | 1:1 | ||||
| 37. Round | 10/03/2007 | Torquay United | - | Wycombe Wanderers | 3:0 | ||||
| 38. Round | 17/03/2007 | Accrington Stanley | - | Torquay United | 1:0 | ||||
| 43. Round | 14/04/2007 | Torquay United | - | Peterborough United | 1:1 | ||||
| 44. Round | 21/04/2007 | Wrexham FC | - | Torquay United | 1:0 | ||||
| 45. Round | 28/04/2007 | Boston United | - | Torquay United | 1:1 | ||||
| 46. Round | 05/05/2007 | Torquay United | - | Hereford United | 0:0 |
England