| 1. Round | 05/08/2006 | Bristol City | - | Scunthorpe United | 1:0 | ||||
| 6. Round | 01/09/2006 | Gillingham FC | - | Scunthorpe United | 0:2 | ||||
| 7. Round | 09/09/2006 | Oldham Athletic | - | Scunthorpe United | 1:0 | ||||
| 8. Round | 12/09/2006 | Scunthorpe United | - | Port Vale FC | 3:0 | ||||
| 9. Round | 16/09/2006 | Scunthorpe United | - | Cheltenham Town | 1:0 | ||||
| 14. Round | 14/10/2006 | Scunthorpe United | - | Brighton & Hove Albion | 1:2 |  |
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| 15. Round | 21/10/2006 | Bradford City | - | Scunthorpe United | 0:1 | ||||
| 16. Round | 28/10/2006 | Scunthorpe United | - | Leyton Orient | 3:1 | ||||
| 19. Round | 25/11/2006 | Yeovil Town | - | Scunthorpe United | 0:2 | ||||
| 21. Round | 09/12/2006 | Carlisle United | - | Scunthorpe United | 0:2 | ||||
| 22. Round | 15/12/2006 | Scunthorpe United | - | Blackpool FC | 1:3 | ||||
| 23. Round | 22/12/2006 | Millwall FC | - | Scunthorpe United | 0:1 |  |
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| 24. Round | 26/12/2006 | Scunthorpe United | - | Chesterfield FC | 1:0 | ||||
| 46. Round | 05/05/2007 | Scunthorpe United | - | Carlisle United | 3:0 |
England