| 21. Round | 08/12/2012 | Barnet FC | - | AFC Wimbledon | 1:1 |  |
|||
| 22. Round | 15/12/2012 | AFC Wimbledon | - | Rotherham United | 0:1 | ||||
| 25. Round | 29/12/2012 | AFC Wimbledon | - | Oxford United | 0:3 | ||||
| 26. Round | 01/01/2013 | Torquay United | - | AFC Wimbledon | 2:3 | ||||
| 27. Round | 05/01/2013 | Rochdale AFC | - | AFC Wimbledon | 0:1 | ||||
| 28. Round | 12/01/2013 | AFC Wimbledon | - | Wycombe Wanderers | 2:2 | ||||
| 30. Round | 24/01/2013 | AFC Wimbledon | - | Port Vale FC | 2:2 | |
|||
| 31. Round | 02/02/2013 | AFC Wimbledon | - | Burton Albion | 1:1 | ||||
| 23. Round | 05/02/2013 | Port Vale FC | - | AFC Wimbledon | 3:0 | ||||
| 32. Round | 09/02/2013 | Chesterfield FC | - | AFC Wimbledon | 2:0 | |
|||
| 33. Round | 16/02/2013 | AFC Wimbledon | - | Bradford City | 2:1 | ||||
| 24. Round | 19/02/2013 | AFC Wimbledon | - | Northampton Town | 1:1 | |
England