| 17. Round | 21/01/2025 | Fleetwood Town | - | Milton Keynes Dons | 2:1 |  |
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| 29. Round | 28/01/2025 | Milton Keynes Dons | - | Harrogate Town | 2:1 | ||||
| 30. Round | 01/02/2025 | Doncaster Rovers | - | Milton Keynes Dons | 2:1 | ||||
| 31. Round | 08/02/2025 | Milton Keynes Dons | - | Bromley FC | 0:1 |  |
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| 19. Round | 11/02/2025 | Barrow AFC | - | Milton Keynes Dons | 2:1 | ||||
| 33. Round | 22/02/2025 | Bradford City | - | Milton Keynes Dons | 2:0 | ||||
| 34. Round | 01/03/2025 | Milton Keynes Dons | - | Colchester United | 0:1 | ||||
| 36. Round | 08/03/2025 | Milton Keynes Dons | - | Morecambe FC | 2:1 | ||||
| 37. Round | 15/03/2025 | Port Vale FC | - | Milton Keynes Dons | 3:0 | |
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| 26. Round | 25/03/2025 | Carlisle United | - | Milton Keynes Dons | 2:2 | ||||
| 39. Round | 29/03/2025 | Milton Keynes Dons | - | Fleetwood Town | 2:4 | ||||
| 41. Round | 05/04/2025 | Milton Keynes Dons | - | Barrow AFC | 0:3 | |
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| 42. Round | 12/04/2025 | Gillingham FC | - | Milton Keynes Dons | 1:0 | ||||
| 43. Round | 18/04/2025 | Milton Keynes Dons | - | Newport County | 0:0 | |
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| 45. Round | 26/04/2025 | Milton Keynes Dons | - | Grimsby Town | 0:0 |
England