| 6. Round | 03/09/2016 | Stevenage FC | - | Hartlepool United | 6:1 |  |
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| 7. Round | 10/09/2016 | Stevenage FC | - | Crawley Town | 2:1 | |
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| 8. Round | 17/09/2016 | Wycombe Wanderers | - | Stevenage FC | 1:0 | ||||
| 9. Round | 24/09/2016 | Stevenage FC | - | Exeter City | 0:2 | ||||
| 10. Round | 27/09/2016 | Cheltenham Town | - | Stevenage FC | 0:0 | ||||
| 23. Round | 31/12/2016 | Stevenage FC | - | Colchester United | 2:4 | ||||
| 24. Round | 02/01/2017 | Doncaster Rovers | - | Stevenage FC | 1:0 | ||||
| 25. Round | 07/01/2017 | Stevenage FC | - | Newport County | 3:1 |
England