| 34. Round | 25/02/2017 | Gillingham FC | - | Southend United | 2:1 | ||||
| 35. Round | 28/02/2017 | Swindon Town | - | Gillingham FC | 3:1 | ||||
| 36. Round | 04/03/2017 | Bury FC | - | Gillingham FC | 1:2 | ||||
| 37. Round | 11/03/2017 | Gillingham FC | - | Scunthorpe United | 3:2 | ||||
| 38. Round | 14/03/2017 | Gillingham FC | - | Bolton Wanderers | 0:4 | ||||
| 39. Round | 18/03/2017 | Rochdale AFC | - | Gillingham FC | 4:1 |  |
|||
| 41. Round | 01/04/2017 | Milton Keynes Dons | - | Gillingham FC | 3:2 | ||||
| 42. Round | 08/04/2017 | Gillingham FC | - | Millwall FC | 1:1 | ||||
| 45. Round | 22/04/2017 | Gillingham FC | - | Fleetwood Town | 2:3 | ||||
| 46. Round | 30/04/2017 | Northampton Town | - | Gillingham FC | 0:0 |
England