Championship   M. W D L goals
  at home 1 0 1 0 3 : 3
  Away 1 0 1 0 2 : 2
  2 0 2 0 5 : 5
League Cup   M. W D L goals
  at home 2 2 0 0 4 : 0
  Away 1 1 0 0 4 : 1
  3 3 0 0 8 : 1
League One   M. W D L goals
  at home 2 1 1 0 6 : 2
  Away 3 2 0 1 7 : 5
  5 3 1 1 13 : 7
overall   M. W D L goals
  at home 5 3 2 0 13 : 5
  Away 5 3 1 1 13 : 8
  Neutral Place 0 0 0 0 0 : 0
  10 6 3 1 26 : 13
Championship
2000/2001 37. Round Bolton Wanderers - Gillingham FC 3:3 (2:1)
2000/2001 11. Round Gillingham FC - Bolton Wanderers 2:2 (0:2)
League Cup
2003/2004 3. Round Bolton Wanderers - Gillingham FC 2:0 (1:0)
1999/2000 2. Round Bolton Wanderers - Gillingham FC 2:0 (2:0)
1999/2000 2. Round Gillingham FC - Bolton Wanderers 1:4 (0:2)
League One
2021/2022 37. Round Gillingham FC - Bolton Wanderers 0:3 (0:1)
2021/2022 15. Round Bolton Wanderers - Gillingham FC 2:2 (0:2)
2019/2020 6. Round Gillingham FC - Bolton Wanderers 5:0 (2:0)
2016/2017 38. Round Gillingham FC - Bolton Wanderers 0:4 (0:3)
2016/2017 21. Round Bolton Wanderers - Gillingham FC 4:0 (2:0)

For games that were decided on penalties the score after 120 minutes will be included in the ranking