| 13. Round | 14/01/2017 | Cagliari Calcio [Youth] | - | FC Crotone [Youth] | 1:3 | ||||
| 14. Round | 21/01/2017 | FC Crotone [Youth] | - | Genoa CFC [Youth] | 0:1 | ||||
| 15. Round | 28/01/2017 | Atalanta [Youth] | - | FC Crotone [Youth] | 3:0 | ||||
| 16. Round | 04/02/2017 | Frosinone Calcio [Youth] | - | FC Crotone [Youth] | 2:2 | ||||
| 18. Round | 18/02/2017 | AS Roma [Youth] | - | FC Crotone [Youth] | 5:3 |  |
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| 21. Round | 11/03/2017 | Bologna FC [Youth] | - | FC Crotone [Youth] | 1:1 | ||||
| 23. Round | 08/04/2017 | Novara Calcio [Youth] | - | FC Crotone [Youth] | 0:3 | |
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| 25. Round | 06/05/2017 | Pisa SC [Youth] | - | FC Crotone [Youth] | 0:0 | ||||
| 26. Round | 13/05/2017 | FC Crotone [Youth] | - | Cagliari Calcio [Youth] | 2:1 |
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