| 1. Round | 10/09/2016 | Pisa SC [Youth] | - | Cagliari Calcio [Youth] | 0:1 | ||||
| 2. Round | 17/09/2016 | Ternana Calcio [Youth] | - | Pisa SC [Youth] | 2:1 | ||||
| 4. Round | 01/10/2016 | US Salernitana 1919 [Youth] | - | Pisa SC [Youth] | 2:3 |  |
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| 6. Round | 22/10/2016 | Pisa SC [Youth] | - | Genoa CFC [Youth] | 1:3 | ||||
| 7. Round | 05/11/2016 | Novara Calcio [Youth] | - | Pisa SC [Youth] | 2:1 | ||||
| 8. Round | 19/11/2016 | Pisa SC [Youth] | - | Virtus Entella [Youth] | 0:3 | ||||
| 10. Round | 03/12/2016 | Frosinone Calcio [Youth] | - | Pisa SC [Youth] | 0:1 | ||||
| 11. Round | 10/12/2016 | Pisa SC [Youth] | - | Atalanta [Youth] | 1:1 |  |
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| 12. Round | 17/12/2016 | FC Crotone [Youth] | - | Pisa SC [Youth] | 4:0 | ||||
| 13. Round | 14/01/2017 | Pisa SC [Youth] | - | Bologna FC [Youth] | 1:2 | ||||
| 21. Round | 10/03/2017 | Virtus Entella [Youth] | - | Pisa SC [Youth] | 5:0 | ||||
| 23. Round | 08/04/2017 | Pisa SC [Youth] | - | Frosinone Calcio [Youth] | 1:0 | ||||
| 25. Round | 06/05/2017 | Pisa SC [Youth] | - | FC Crotone [Youth] | 0:0 | ||||
| 26. Round | 13/05/2017 | Bologna FC [Youth] | - | Pisa SC [Youth] | 4:0 |
Italy