| 1. Round | 05/08/2006 | Hartlepool United | - | Swindon Town | 0:1 | ||||
| 2. Round | 08/08/2006 | Swindon Town | - | Barnet FC | 2:1 |  |
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| 3. Round | 12/08/2006 | Swindon Town | - | Rochdale AFC | 1:0 | ||||
| 4. Round | 19/08/2006 | Darlington FC | - | Swindon Town | 1:2 |  |
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| 5. Round | 26/08/2006 | Swindon Town | - | Stockport County | 2:0 | ||||
| 6. Round | 01/09/2006 | Chester City | - | Swindon Town | 0:2 | ||||
| 7. Round | 09/09/2006 | Wrexham FC | - | Swindon Town | 2:1 | |
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| 8. Round | 12/09/2006 | Swindon Town | - | Milton Keynes Dons | 2:1 | |
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| 9. Round | 16/09/2006 | Swindon Town | - | Peterborough United | 0:1 | ||||
| 10. Round | 23/09/2006 | Notts County | - | Swindon Town | 1:1 | ||||
| 11. Round | 26/09/2006 | Wycombe Wanderers | - | Swindon Town | 1:1 | |
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| 13. Round | 07/10/2006 | Accrington Stanley | - | Swindon Town | 1:1 | ||||
| 17. Round | 04/11/2006 | Swindon Town | - | Hereford United | 1:2 | ||||
| 18. Round | 18/11/2006 | Torquay United | - | Swindon Town | 0:1 | ||||
| 23. Round | 23/12/2006 | Macclesfield Town | - | Swindon Town | 2:1 |
Wales