| 1. Round | 10/09/2016 | Atalanta [Youth] | - | Frosinone Calcio [Youth] | 3:2 | ||||
| 2. Round | 17/09/2016 | FC Crotone [Youth] | - | Atalanta [Youth] | 2:3 | ||||
| 7. Round | 05/11/2016 | Cagliari Calcio [Youth] | - | Atalanta [Youth] | 0:1 | ||||
| 9. Round | 26/11/2016 | Virtus Entella [Youth] | - | Atalanta [Youth] | 3:1 | ||||
| 13. Round | 14/01/2017 | US Salernitana 1919 [Youth] | - | Atalanta [Youth] | 0:1 | ||||
| 14. Round | 21/01/2017 | Frosinone Calcio [Youth] | - | Atalanta [Youth] | 2:1 | ||||
| 23. Round | 08/04/2017 | Inter [Youth] | - | Atalanta [Youth] | 1:3 | ||||
| 24. Round | 15/04/2017 | Atalanta [Youth] | - | Pisa SC [Youth] | 5:0 | ||||
| 25. Round | 29/04/2017 | AS Roma [Youth] | - | Atalanta [Youth] | 0:3 | ||||
| 26. Round | 13/05/2017 | Atalanta [Youth] | - | US Salernitana 1919 [Youth] | 7:0 |
Italy