| 1. Round | 26/07/2009 | Slaven Belupo | - | NK Zagreb | 2:0 | ||||
| 2. Round | 31/07/2009 | NK Zagreb | - | NK Inter Zaprešić | 0:3 | ||||
| 3. Round | 09/08/2009 | HNK Rijeka | - | NK Zagreb | 3:1 |  |
|||
| 4. Round | 14/08/2009 | NK Zagreb | - | Lokomotiva Zagreb | 2:4 | ||||
| 11. Round | 17/10/2009 | NK Zagreb | - | Dinamo Zagreb | 1:0 | |
|||
| 12. Round | 24/10/2009 | NK Međimurje | - | NK Zagreb | 4:2 | ||||
| 13. Round | 31/10/2009 | NK Zagreb | - | NK Croatia Sesvete | 4:2 | ||||
| 14. Round | 07/11/2009 | NK Osijek | - | NK Zagreb | 5:3 | |
|||
| 16. Round | 28/11/2009 | NK Zagreb | - | Slaven Belupo | 3:3 | ||||
| 17. Round | 04/12/2009 | NK Inter Zaprešić | - | NK Zagreb | 1:3 | ||||
| 21. Round | 19/03/2010 | NK Zagreb | - | NK Istra 1961 | 1:1 | ||||
| 22. Round | 27/03/2010 | HNK Cibalia | - | NK Zagreb | 1:0 | ||||
| 23. Round | 02/04/2010 | NK Zagreb | - | Hajduk Split | 1:1 | |
|||
| 24. Round | 10/04/2010 | HNK Šibenik | - | NK Zagreb | 3:1 | |
|||
| 25. Round | 14/04/2010 | NK Zagreb | - | NK Karlovac | 4:2 | ||||
| 30. Round | 13/05/2010 | NK Zadar | - | NK Zagreb | 1:0 |
Croatia