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| 03/02/2009 | 19:45 | Huddersfield Town | - | Hartlepool United | 1:1 (1:1) | |
| 19:45 | Stockport County | - | Milton Keynes Dons | 0:1 (0:1) | ||
| 19:45 | Walsall FC | - | Leicester City | 1:4 (0:2) | ||
| 10/02/2009 | 19:45 | Brighton & Hove Albion | - | Peterborough United | 2:4 (2:2) | |
| 24/02/2009 | 19:45 | Crewe Alexandra | - | Yeovil Town | 2:0 (1:0) | |
| 19:45 | Oldham Athletic | - | Bristol Rovers | 0:2 (0:0) | ||
| 19:45 | Southend United | - | Scunthorpe United | 2:0 (0:0) | ||
| 17/03/2009 | 19:45 | Cheltenham Town | - | Tranmere Rovers | 1:0 (1:0) | |
| 24/03/2009 | 19:45 | Carlisle United | - | Hereford United | 1:2 (1:2) | |
| 19:45 | Northampton Town | - | Swindon Town | 3:4 (1:3) | ||
| 31/03/2009 | 19:45 | Millwall FC | - | Colchester United | 0:1 (0:0) | |
| 07/04/2009 | 19:45 | Leyton Orient | - | Leeds United | 2:2 (0:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Leicester City | 30 | 20 | 8 | 2 | 60:25 | 35 | 68 |
| 2 |
|
Milton Keynes Dons | 30 | 18 | 3 | 9 | 58:33 | 25 | 57 |
| 3 |
|
Millwall FC | 30 | 17 | 6 | 7 | 42:31 | 11 | 57 |
| 4 |
|
Scunthorpe United | 30 | 17 | 5 | 8 | 55:38 | 17 | 56 |
| 5 |
|
Peterborough United | 30 | 15 | 9 | 6 | 56:39 | 17 | 54 |
| 6 |
|
Oldham Athletic | 30 | 13 | 10 | 7 | 47:38 | 9 | 49 |
| 7 |
|
Stockport County | 30 | 13 | 8 | 9 | 45:33 | 12 | 47 |
| 8 |
|
Tranmere Rovers | 30 | 14 | 5 | 11 | 42:36 | 6 | 47 |
| 9 |
|
Leeds United | 30 | 14 | 4 | 12 | 48:39 | 9 | 46 |
| 10 |
|
Colchester United | 30 | 13 | 6 | 11 | 44:40 | 4 | 45 |
| 11 |
|
Huddersfield Town | 30 | 12 | 8 | 10 | 40:43 | -3 | 44 |
| 12 |
|
Bristol Rovers | 30 | 10 | 10 | 10 | 51:43 | 8 | 40 |
| 13 |
|
Walsall FC | 30 | 11 | 6 | 13 | 42:44 | -2 | 39 |
| 14 |
|
Hartlepool United | 30 | 10 | 8 | 12 | 44:47 | -3 | 38 |
| 15 |
|
Southend United | 30 | 10 | 7 | 13 | 34:45 | -11 | 37 |
| 16 |
|
Northampton Town | 30 | 8 | 10 | 12 | 43:43 | 0 | 34 |
| 17 |
|
Carlisle United | 30 | 9 | 6 | 15 | 39:49 | -10 | 33 |
| 18 |
|
Yeovil Town | 30 | 8 | 9 | 13 | 26:42 | -16 | 33 |
| 19 |
|
Swindon Town | 30 | 7 | 11 | 12 | 44:52 | -8 | 32 |
| 20 |
|
Brighton & Hove Albion | 30 | 6 | 11 | 13 | 34:47 | -13 | 29 |
| 21 |
|
Crewe Alexandra | 30 | 8 | 5 | 17 | 38:60 | -22 | 29 |
| 22 |
|
Leyton Orient | 30 | 6 | 9 | 15 | 25:41 | -16 | 27 |
| 23 |
|
Hereford United | 30 | 7 | 6 | 17 | 28:47 | -19 | 27 |
| 24 |
|
Cheltenham Town | 30 | 6 | 6 | 18 | 36:66 | -30 | 24 |
| Promotion | |
| Playoffs | |
| Relegation |
