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| 02/03/2009 | 19:45 | Oldham Athletic | - | Leeds United | 1:1 (0:0) | |
| 03/03/2009 | 19:30 | Scunthorpe United | - | Walsall FC | 1:1 (0:0) | |
| 19:45 | Crewe Alexandra | - | Carlisle United | 1:2 (1:1) | ||
| 19:45 | Hartlepool United | - | Tranmere Rovers | 2:1 (0:0) | ||
| 19:45 | Huddersfield Town | - | Colchester United | 2:2 (0:1) | ||
| 19:45 | Leicester City | - | Stockport County | 1:1 (1:1) | ||
| 19:45 | Leyton Orient | - | Peterborough United | 2:3 (1:3) | ||
| 19:45 | Southend United | - | Millwall FC | 0:1 (0:1) | ||
| 19:45 | Swindon Town | - | Cheltenham Town | 2:2 (1:1) | ||
| 21/04/2009 | 19:45 | Bristol Rovers | - | Brighton & Hove Albion | 1:2 (1:1) | |
| 19:45 | Yeovil Town | - | Hereford United | 2:2 (0:1) | ||
| 28/04/2009 | 19:45 | Northampton Town | - | Milton Keynes Dons | 0:1 (0:1) |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Leicester City | 35 | 21 | 12 | 2 | 65:29 | 36 | 75 |
| 2 |
|
Milton Keynes Dons | 35 | 20 | 6 | 9 | 67:39 | 28 | 66 |
| 3 |
|
Peterborough United | 35 | 18 | 9 | 8 | 63:46 | 17 | 63 |
| 4 |
|
Millwall FC | 35 | 18 | 7 | 10 | 47:39 | 8 | 61 |
| 5 |
|
Scunthorpe United | 35 | 18 | 6 | 11 | 63:48 | 15 | 60 |
| 6 |
|
Oldham Athletic | 35 | 15 | 13 | 7 | 55:44 | 11 | 58 |
| 7 |
|
Leeds United | 35 | 17 | 5 | 13 | 56:43 | 13 | 56 |
| 8 |
|
Stockport County | 35 | 14 | 11 | 10 | 51:39 | 12 | 53 |
| 9 |
|
Tranmere Rovers | 35 | 15 | 7 | 13 | 46:41 | 5 | 52 |
| 10 |
|
Huddersfield Town | 35 | 14 | 10 | 11 | 47:50 | -3 | 52 |
| 11 |
|
Walsall FC | 35 | 14 | 8 | 13 | 51:47 | 4 | 50 |
| 12 |
|
Colchester United | 35 | 14 | 8 | 13 | 48:46 | 2 | 50 |
| 13 |
|
Southend United | 35 | 13 | 7 | 15 | 39:51 | -12 | 46 |
| 14 |
|
Bristol Rovers | 35 | 11 | 11 | 13 | 56:49 | 7 | 44 |
| 15 |
|
Hartlepool United | 35 | 11 | 10 | 14 | 50:55 | -5 | 43 |
| 16 |
|
Yeovil Town | 35 | 10 | 11 | 14 | 34:49 | -15 | 41 |
| 17 |
|
Swindon Town | 35 | 9 | 13 | 13 | 54:58 | -4 | 40 |
| 18 |
|
Carlisle United | 35 | 11 | 7 | 17 | 45:54 | -9 | 40 |
| 19 |
|
Brighton & Hove Albion | 35 | 9 | 11 | 15 | 39:55 | -16 | 38 |
| 20 |
|
Northampton Town | 35 | 9 | 10 | 16 | 45:49 | -4 | 37 |
| 21 |
|
Crewe Alexandra | 35 | 10 | 6 | 19 | 48:66 | -18 | 36 |
| 22 |
|
Leyton Orient | 35 | 8 | 10 | 17 | 30:46 | -16 | 34 |
| 23 |
|
Hereford United | 35 | 9 | 7 | 19 | 36:55 | -19 | 34 |
| 24 |
|
Cheltenham Town | 35 | 6 | 7 | 22 | 40:77 | -37 | 25 |
| Promotion | |
| Playoffs | |
| Relegation |
