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| 02/12/2006 | 15:00 | Halifax Town | - | Woking FC | 3:0 | |
| 15:00 | Forest Green Rovers | - | York City | 0:1 | ||
| 15:00 | Dagenham & Redbridge | - | Southport FC | 0:0 | ||
| 15:00 | Gravesend & Northfleet | - | Kidderminster Harriers | 1:3 | ||
| 15:00 | Weymouth FC | - | Grays Athletic | 3:2 | ||
| 15:00 | Altrincham FC | - | Burton Albion | 2:3 | ||
| 15:00 | Stevenage Borough FC | - | Oxford United | 2:2 | ||
| 13/01/2007 | 15:00 | Cambridge United | - | Stafford Rangers | 0:1 | |
| 15:00 | Aldershot Town | - | Crawley Town | 0:2 | ||
| 20/02/2007 | 19:45 | Exeter City | - | Rushden & Diamonds | 0:0 | |
| 03/04/2007 | 19:45 | St. Albans City | - | Morecambe FC | 0:2 | |
| 19:45 | Tamworth FC | - | Northwich Victoria | 0:1 |
| » Tables | Home | Away | First round | Second round |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Oxford United | 21 | 14 | 6 | 1 | 39:13 | 26 | 48 |
| 2 |
|
Dagenham & Redbridge | 21 | 14 | 4 | 3 | 47:21 | 26 | 46 |
| 3 |
|
Burton Albion | 21 | 11 | 4 | 6 | 25:21 | 4 | 37 |
| 4 |
|
Weymouth FC | 21 | 11 | 4 | 6 | 26:24 | 2 | 37 |
| 5 |
|
York City | 21 | 11 | 4 | 6 | 28:27 | 1 | 37 |
| 6 |
|
Morecambe FC | 21 | 10 | 6 | 5 | 27:22 | 5 | 36 |
| 7 |
|
Gravesend & Northfleet | 21 | 10 | 5 | 6 | 30:24 | 6 | 35 |
| 8 |
|
Exeter City | 21 | 7 | 10 | 4 | 28:20 | 8 | 31 |
| 9 |
|
Stafford Rangers | 21 | 8 | 6 | 7 | 22:29 | -7 | 30 |
| 10 |
|
Aldershot Town | 21 | 8 | 5 | 8 | 30:28 | 2 | 29 |
| 11 |
|
Woking FC | 21 | 8 | 4 | 9 | 29:27 | 2 | 28 |
| 12 |
|
Northwich Victoria | 21 | 9 | 1 | 11 | 27:35 | -8 | 28 |
| 13 |
|
Grays Athletic | 21 | 7 | 6 | 8 | 35:24 | 11 | 27 |
| 14 |
|
Stevenage Borough FC | 21 | 7 | 5 | 9 | 35:36 | -1 | 26 |
| 15 |
|
Halifax Town | 21 | 7 | 4 | 10 | 27:29 | -2 | 25 |
| 16 |
|
Kidderminster Harriers | 21 | 6 | 6 | 9 | 21:27 | -6 | 24 |
| 17 |
|
Crawley Town | 21 | 10 | 2 | 9 | 28:24 | 4 | 22 |
| 18 |
|
Altrincham FC | 21 | 5 | 7 | 9 | 22:32 | -10 | 22 |
| 19 |
|
Forest Green Rovers | 21 | 4 | 9 | 8 | 22:30 | -8 | 21 |
| 20 |
|
Cambridge United | 21 | 5 | 5 | 11 | 19:30 | -11 | 20 |
| 21 |
|
Tamworth FC | 21 | 5 | 5 | 11 | 23:36 | -13 | 20 |
| 22 |
|
St. Albans City | 21 | 5 | 4 | 12 | 29:42 | -13 | 19 |
| 23 |
|
Rushden & Diamonds | 21 | 4 | 6 | 11 | 22:29 | -7 | 18 |
| 24 |
|
Southport FC | 21 | 3 | 8 | 10 | 20:31 | -11 | 17 |
| Promotion |
