| 5. Round | 17/09/2006 | Tasmania Gropiusstadt [Youth] | - | Werder Bremen [Youth] | 0:8 | ||||
| 7. Round | 01/10/2006 | TeBe Berlin [Youth] | - | Werder Bremen [Youth] | 0:8 | ||||
| 9. Round | 29/10/2006 | Energie Cottbus [Youth] | - | Werder Bremen [Youth] | 0:1 | ||||
| 14. Round | 18/02/2007 | Rot-Weiß Erfurt [Youth] | - | Werder Bremen [Youth] | 0:6 | ||||
| 16. Round | 04/03/2007 | Holstein Kiel [Youth] | - | Werder Bremen [Youth] | 2:5 |  |
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| 20. Round | 15/04/2007 | Werder Bremen [Youth] | - | TeBe Berlin [Youth] | 2:1 | ||||
| 21. Round | 22/04/2007 | Chemnitzer FC [Youth] | - | Werder Bremen [Youth] | 1:3 | ||||
| 22. Round | 28/04/2007 | Werder Bremen [Youth] | - | Energie Cottbus [Youth] | 5:0 | ||||
| 23. Round | 01/05/2007 | Hertha BSC [Youth] | - | Werder Bremen [Youth] | 0:3 | ||||
| 24. Round | 05/05/2007 | Werder Bremen [Youth] | - | Hannover 96 [Youth] | 1:2 | |
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| 25. Round | 03/06/2007 | SG Sachsen Leipzig [Youth] | - | Werder Bremen [Youth] | 0:2 |
Germany