| 2. Round | 23/07/2016 | SV Seligenporten | - | Bayern München II | 1:2 |  |
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| 3. Round | 30/07/2016 | FC Augsburg II | - | SV Seligenporten | 12:0 | ||||
| 4. Round | 02/08/2016 | SV Seligenporten | - | SV Schalding-Heining | 1:6 | ||||
| 5. Round | 05/08/2016 | 1. FC Schweinfurt 05 | - | SV Seligenporten | 1:0 | ||||
| 6. Round | 13/08/2016 | SV Seligenporten | - | 1. FC Nürnberg II | 1:4 | ||||
| 8. Round | 27/08/2016 | SV Seligenporten | - | SpVgg Bayern Hof | 5:1 | ||||
| 10. Round | 10/09/2016 | TSV Buchbach | - | SV Seligenporten | 0:0 |  |
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| 16. Round | 22/10/2016 | VfR Garching | - | SV Seligenporten | 3:1 | ||||
| 17. Round | 29/10/2016 | SV Seligenporten | - | FC Memmingen | 2:4 | ||||
| 19. Round | 11/11/2016 | Bayern München II | - | SV Seligenporten | 2:0 | ||||
| 31. Round | 29/04/2017 | SV Seligenporten | - | TSV 1860 München II | 1:2 | ||||
| 32. Round | 05/05/2017 | TSV 1860 Rosenheim | - | SV Seligenporten | 3:0 |
Germany