| 1. Round | 23/07/2011 | Rot-Weiß Erfurt | - | FC Carl Zeiss Jena | 3:0 | ||||
| 2. Round | 02/08/2011 | FC Carl Zeiss Jena | - | Wacker Burghausen | 1:0 |  |
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| 3. Round | 05/08/2011 | 1. FC Saarbrücken | - | FC Carl Zeiss Jena | 2:1 | ||||
| 4. Round | 13/08/2011 | FC Carl Zeiss Jena | - | Preußen Münster | 1:3 | ||||
| 5. Round | 16/08/2011 | 1. FC Heidenheim 1846 | - | FC Carl Zeiss Jena | 0:0 | ||||
| 6. Round | 20/08/2011 | FC Carl Zeiss Jena | - | Kickers Offenbach | 1:2 | ||||
| 7. Round | 27/08/2011 | SpVgg Unterhaching | - | FC Carl Zeiss Jena | 6:0 | ||||
| 9. Round | 14/09/2011 | Rot-Weiß Oberhausen | - | FC Carl Zeiss Jena | 1:2 | ||||
| 10. Round | 17/09/2011 | FC Carl Zeiss Jena | - | SV Sandhausen | 1:1 | |
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| 12. Round | 30/09/2011 | Werder Bremen II | - | FC Carl Zeiss Jena | 2:2 | ||||
| 11. Round | 08/10/2011 | FC Carl Zeiss Jena | - | SV Babelsberg 03 | 1:2 |  |
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| 13. Round | 14/10/2011 | FC Carl Zeiss Jena | - | VfB Stuttgart II | 1:2 | |
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| 14. Round | 22/10/2011 | VfL Osnabrück | - | FC Carl Zeiss Jena | 2:2 | ||||
| 15. Round | 29/10/2011 | FC Carl Zeiss Jena | - | VfR Aalen | 2:3 |
Germany