| 3. Round | 14/08/1998 | SC Pfullendorf | - | 1. FC Schweinfurt 05 | 0:0 | ||||
| 23. Round | 21/03/1999 | TSV 1860 München II | - | 1. FC Schweinfurt 05 | 1:1 | ||||
| 24. Round | 27/03/1999 | 1. FC Schweinfurt 05 | - | Karlsruher SC II | 2:1 | ||||
| 25. Round | 04/04/1999 | FSV Frankfurt | - | 1. FC Schweinfurt 05 | 3:1 | ||||
| 26. Round | 10/04/1999 | 1. FC Schweinfurt 05 | - | SC Weismain | 1:0 | ||||
| 27. Round | 17/04/1999 | VfR Mannheim | - | 1. FC Schweinfurt 05 | 0:0 | ||||
| 28. Round | 24/04/1999 | 1. FC Schweinfurt 05 | - | SC Neukirchen | 1:1 |  |
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| 29. Round | 02/05/1999 | TSF Ditzingen | - | 1. FC Schweinfurt 05 | 0:1 | ||||
| 31. Round | 12/05/1999 | Bayern München II | - | 1. FC Schweinfurt 05 | 1:5 | ||||
| 32. Round | 15/05/1999 | 1. FC Schweinfurt 05 | - | SSV Reutlingen | 0:0 | ||||
| 34. Round | 28/05/1999 | 1. FC Schweinfurt 05 | - | Wacker Burghausen | 2:3 |
Serbia