| 9. Round | 27/08/2016 | SV Kirchanschöring | - | FC Pipinsried | 0:2 |  |
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| 10. Round | 04/09/2016 | FC Pipinsried | - | TSV 1896 Rain | 2:0 | |
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| 15. Round | 08/10/2016 | FC Ismaning | - | FC Pipinsried | 1:1 | ||||
| 18. Round | 29/10/2016 | 1. FC Sonthofen | - | FC Pipinsried | 1:2 | ||||
| 20. Round | 13/11/2016 | FC Pipinsried | - | TSV Kottern-St. Mang | 1:1 | ||||
| 22. Round | 27/11/2016 | FC Pipinsried | - | TSV 1883 Bogen | 1:0 | ||||
| 26. Round | 26/03/2017 | FC Pipinsried | - | SV Kirchanschöring | 1:0 | |
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| 29. Round | 15/04/2017 | Jahn Regensburg II | - | FC Pipinsried | 0:1 | ||||
| 30. Round | 23/04/2017 | FC Pipinsried | - | SpVgg Hankofen-Hailing | 2:0 | |
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| 31. Round | 30/04/2017 | TSV Schwabmünchen | - | FC Pipinsried | 1:0 |
Canada