| 1. Round | 06/08/2006 | TSG Neustrelitz | - | BFC Preussen | 3:0 | ||||
| 2. Round | 12/08/2006 | BFC Preussen | - | BAK Ankaraspor 07 | 1:4 |  |
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| 3. Round | 20/08/2006 | LFC Berlin | - | BFC Preussen | 4:1 | ||||
| 4. Round | 26/08/2006 | BFC Preussen | - | TeBe Berlin | 1:3 | |
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| 5. Round | 10/09/2006 | Torgelower SV Greif | - | BFC Preussen | 4:3 | ||||
| 6. Round | 23/09/2006 | BFC Preussen | - | MSV 1919 Neuruppin | 4:0 | ||||
| 7. Round | 30/09/2006 | Hansa Rostock II | - | BFC Preussen | 3:2 | ||||
| 8. Round | 15/10/2006 | BFC Preussen | - | Türkiyemspor Berlin | 0:0 | |
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| 9. Round | 22/10/2006 | SV Yesilyurt | - | BFC Preussen | 4:1 | ||||
| 12. Round | 11/11/2006 | Ludwigsfelder FC | - | BFC Preussen | 0:0 | ||||
| 15. Round | 02/12/2006 | BFC Preussen | - | FC Schönberg 95 | 3:2 |
Germany