| 1. Round | 13/08/2016 | Niendorfer TSV [Youth B] | - | Werder Bremen [Youth B] | 0:7 |  |
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| 2. Round | 20/08/2016 | Werder Bremen [Youth B] | - | VfL Wolfsburg [Youth B] | 3:2 | ||||
| 3. Round | 27/08/2016 | 1. FC Union Berlin [Youth B] | - | Werder Bremen [Youth B] | 0:4 | ||||
| 10. Round | 29/10/2016 | Werder Bremen [Youth B] | - | Holstein Kiel [Youth B] | 6:1 | ||||
| 11. Round | 05/11/2016 | Werder Bremen [Youth B] | - | RB Leipzig [Youth B] | 1:0 | ||||
| 12. Round | 12/11/2016 | Dynamo Dresden [Youth B] | - | Werder Bremen [Youth B] | 0:4 | ||||
| 22. Round | 02/04/2017 | Werder Bremen [Youth B] | - | 1. FC Magdeburg [Youth B] | 5:0 | ||||
| 23. Round | 08/04/2017 | Holstein Kiel [Youth B] | - | Werder Bremen [Youth B] | 1:2 | |
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| 24. Round | 23/04/2017 | RB Leipzig [Youth B] | - | Werder Bremen [Youth B] | 1:0 |
Germany