| 1. Round | 13/08/2016 | Arminia Bielefeld [Youth B] | - | MSV Duisburg [Youth B] | 1:1 | ||||
| 2. Round | 20/08/2016 | MSV Duisburg [Youth B] | - | FC Schalke 04 [Youth B] | 1:3 | ||||
| 3. Round | 28/08/2016 | Viktoria Köln [Youth B] | - | MSV Duisburg [Youth B] | 0:2 | ||||
| 4. Round | 10/09/2016 | MSV Duisburg [Youth B] | - | Hombrucher SV [Youth B] | 0:0 |  |
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| 6. Round | 24/09/2016 | MSV Duisburg [Youth B] | - | Bor. Mönchengladbach [Youth B] | 2:1 | ||||
| 7. Round | 09/10/2016 | Bayer Leverkusen [Youth B] | - | MSV Duisburg [Youth B] | 2:0 |  |
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| 8. Round | 15/10/2016 | MSV Duisburg [Youth B] | - | 1. FC Köln [Youth B] | 0:0 | ||||
| 9. Round | 23/10/2016 | MSV Duisburg [Youth B] | - | Fortuna Düsseldorf [Youth B] | 0:1 | |
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| 10. Round | 29/10/2016 | VfL Bochum [Youth B] | - | MSV Duisburg [Youth B] | 1:0 | ||||
| 13. Round | 26/11/2016 | MSV Duisburg [Youth B] | - | Borussia Dortmund [Youth B] | 3:4 | |
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| 16. Round | 18/12/2016 | MSV Duisburg [Youth B] | - | Viktoria Köln [Youth B] | 3:2 | |
Germany