| 11. Round | 08/09/2012 | FC Augsburg II | - | TSV 1860 München II | 0:1 | ||||
| 12. Round | 14/09/2012 | SC Eltersdorf | - | FC Augsburg II | 4:1 | ||||
| 13. Round | 21/09/2012 | FC Augsburg II | - | FC Memmingen | 1:1 | ||||
| 14. Round | 29/09/2012 | FC Ingolstadt 04 II | - | FC Augsburg II | 3:0 | ||||
| 17. Round | 13/10/2012 | FC Augsburg II | - | TSV Buchbach | 1:2 | ||||
| 28. Round | 16/03/2013 | SpVgg Bayern Hof | - | FC Augsburg II | 3:2 | ||||
| 31. Round | 06/04/2013 | FC Augsburg II | - | SC Eltersdorf | 1:1 | ||||
| 32. Round | 12/04/2013 | FC Memmingen | - | FC Augsburg II | 2:1 | ||||
| 36. Round | 10/05/2013 | TSV Buchbach | - | FC Augsburg II | 4:0 | ||||
| 37. Round | 18/05/2013 | FC Augsburg II | - | VfL Frohnlach | 5:1 | ||||
| 38. Round | 25/05/2013 | Eintracht Bamberg | - | FC Augsburg II | 2:3 |
Germany